Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs10820909 chr9:94641723 G/T 1.17E-6 507 22.72 23.38 13.27 KM Plot
LGG rs10827817 chr10:37997974 A/G 2.43E-5 509 21.68 24.03 16.78 KM Plot
LGG rs10829195 chr10:27431564 G/A 7.67E-5 507 19.15 20.43 24.53 KM Plot
LGG rs10852328 chr16:8710497 C/G 2.17E-7 502 8.17 17.2 24.05 KM Plot
LGG rs10852329 chr16:8710653 G/C 1.54E-7 501 8.17 17.32 24.05 KM Plot
LGG rs10884258 chr10:107895607 A/G 2.33E-5 509 19.27 27.83 21.6 KM Plot
LGG rs10885547 chr10:116079505 C/T 1.13E-6 509 15.53 22.62 23.58 KM Plot
LGG rs10887268 chr10:86035741 T/C 3.47E-6 500 18.28 24.53 21.3 KM Plot
LGG rs10896453 chr11:69021038 C/T 2.35E-5 509 20.17 22.57 22.6 KM Plot
LGG rs10898948 chr11:73572775 T/C 2.12E-6 507 23.88 21.28 18.07 KM Plot
LGG rs10898950 chr11:73600888 C/T 1.26E-5 509 23.83 20.93 18.9 KM Plot
LGG rs10904577 chr10:922077 A/G 3.2E-8 505 21.87 24.37 14.15 KM Plot
LGG rs10904581 chr10:964685 A/T 9.82E-5 506 23.53 22.73 14.65 KM Plot
LGG rs10950827 chr7:20705595 C/G 1.86E-5 487 23.8 21.27 14.47 KM Plot
LGG rs111310751 chr19:878159 G/C 5.47E-5 497 21 26.32 20.27 KM Plot